3BPP Hydrolase date Dec 19, 2007
title 1510-N Membrane Protease K138a Mutant Specific For A Stomati From Pyrococcus Horikoshii
authors H.Yokoyama, S.Hamamatsu, S.Fujii, I.Matsui
compound source
Molecule: 1510-N Membrane Protease
Chain: A
Fragment: Residues 16-236
Synonym: 441aa Long Hypothetical Nfed Protein
Engineered: Yes
Mutation: Yes
 Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 53953
Gene: Ph1510
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: I 4 2 2
R_factor 0.237 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.261 106.261 128.994 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
Primary referenceNovel dimer structure of a membrane-bound protease with a catalytic Ser-Lys dyad and its linkage to stomatin., Yokoyama H, Hamamatsu S, Fujii S, Matsui I, J Synchrotron Radiat. 2008 May;15(Pt 3):254-7. Epub 2008 Apr 18. PMID:18421152
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (3bpp.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (3bpp.pdb2.gz) 69 Kb
  • Biological Unit Coordinates (3bpp.pdb3.gz) 35 Kb
  • CSU: Contacts of Structural Units for 3BPP
  • Likely Quarternary Molecular Structure file(s) for 3BPP
  • Structure Factors (129 Kb)
  • Retrieve 3BPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BPP from S2C, [Save to disk]
  • Re-refined 3bpp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BPP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BPP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bpp] [3bpp_A]
  • SWISS-PROT database: [O59179]
  • Belongs to the stomatin/podocin/band 7/nephrosis.2/spfh (stomatin) family according to TCDB.
  • Domain organization of [O59179_PYRHO] by SWISSPFAM
    • Other resources with information on 3BPP
  • Community annotation for 3BPP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science