3BRB	Transferase	date	Dec 21, 2007
title	Crystal Structure Of Catalytic Domain Of The Proto-Oncogene Protein Kinase Mer In Complex With Adp
authors	J.R.Walker, X.Huang, P.J.Finerty Jr, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Genomics C (Sgc)
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Mer Chain: A, B Fragment: Catalytic Domain: Residues 574-864 Synonym: C-Mer, Receptor Tyrosine Kinase Mertk Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Peripheral Blood Leukocyte Gene: Mertk, Mer Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a-Lic
symmetry	Space Group: P 1 21 1	R_factor 0.192 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.385 89.880 69.537 90.00 103.09 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	ADP, CL, GOL, MG	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural insights into the inhibited states of the Mer receptor tyrosine kinase., Huang X, Finerty P Jr, Walker JR, Butler-Cole C, Vedadi M, Schapira M, Parker SA, Turk BE, Thompson DA, Dhe-Paganon S, J Struct Biol. 2009 Feb;165(2):88-96. Epub 2008 Nov 5. PMID:19028587

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk] Biological Unit Coordinates (3brb.pdb1.gz) 89 Kb Biological Unit Coordinates (3brb.pdb2.gz) 92 Kb LPC: Ligand-Protein Contacts for 3BRB CSU: Contacts of Structural Units for 3BRB Likely Quarternary Molecular Structure file(s) for 3BRB Structure Factors (773 Kb) Retrieve 3BRB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BRB from S2C, [Save to disk] Re-refined 3brb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BRB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BRB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BRB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3brb_A] [3brb] [3brb_B] SWISS-PROT database: [Q12866] Domain organization of [MERTK_HUMAN] by SWISSPFAM Domain found in 3BRB: [TyrKc ] by SMART

Other resources with information on 3BRB

Community annotation for 3BRB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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