3BRS Transport Protein date Dec 21, 2007
title Crystal Structure Of Sugar Transporter From Clostridium Phytofermentans
authors V.N.Malashkevich, Y.Patskovsky, R.Toro, A.J.Meyers, S.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Periplasmic Binding Proteinlaci Transcriptional
Chain: A, B
Fragment: Residues 32-309
Engineered: Yes
 Organism_scientific: Clostridium Phytofermentans
Organism_taxid: 357809
Strain: Isdg
Gene: Cphydraft_2568
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.620 54.700 90.240 90.00 111.78 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene CPHYDRAFT
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (3brs.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3brs.pdb2.gz) 45 Kb
  • CSU: Contacts of Structural Units for 3BRS
  • Likely Quarternary Molecular Structure file(s) for 3BRS
  • Structure Factors (620 Kb)
  • Retrieve 3BRS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BRS from S2C, [Save to disk]
  • Re-refined 3brs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BRS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BRS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BRS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3brs_A] [3brs_B] [3brs]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3BRS
  • Community annotation for 3BRS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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