3BS0 Transport Protein date Dec 21, 2007
title Crystal Structure Of The P. Putida Toluene Transporter Todx
authors E.M.Hearn, D.R.Patel, B.Van Den Berg
compound source
Molecule: Todx
Chain: A, B
Fragment: Sequence Database Residues 21-453
Engineered: Yes
 Organism_scientific: Pseudomonas Putida
Strain: F1
Gene: Todx
Expression_system: Escherichia Coli
Expression_system_strain: C43(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad22
symmetry Space Group: P 1
R_factor 0.253 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.098 41.415 141.064 98.39 90.01 90.06
method X-Ray Diffractionresolution 2.60 Å
ligand C8E enzyme
Primary referenceOuter-membrane transport of aromatic hydrocarbons as a first step in biodegradation., Hearn EM, Patel DR, van den Berg B, Proc Natl Acad Sci U S A. 2008 Jun 24;105(25):8601-6. Epub 2008 Jun 16. PMID:18559855
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (3bs0.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (3bs0.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 3BS0
  • CSU: Contacts of Structural Units for 3BS0
  • Likely Quarternary Molecular Structure file(s) for 3BS0
  • Structure Factors (204 Kb)
  • Retrieve 3BS0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BS0 from S2C, [Save to disk]
  • Re-refined 3bs0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BS0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BS0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BS0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bs0_B] [3bs0_A] [3bs0]
  • SWISS-PROT database: [A5W4F4]
  • Domain organization of [A5W4F4_PSEP1] by SWISSPFAM
    • Other resources with information on 3BS0
  • Community annotation for 3BS0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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