3BVK	Oxidoreductase	date	Jan 07, 2008
title	Structural Basis For The Iron Uptake Mechanism Of Helicobact Ferritin
authors	K.H.Kim, K.J.Cho, J.H.Lee, H.J.Shin, I.S.Yang
compound		source
Molecule: Ferritin Chain: A, B, C, D, E, F Ec: 1.16.3.1 Engineered: Yes		Organism_scientific: Helicobacter Pylori Organism_taxid: 210 Strain: J99 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet
symmetry	Space Group: I 4	R_factor 0.174 R_Free 0.194
crystal cell	length a length b length c angle alpha angle beta angle gamma 128.454 128.454 165.334 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	FE, GOL	enzyme	Oxidoreductase E.C.1.16.3.1 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (369 Kb) [Save to disk] Biological Unit Coordinates (3bvk.pdb1.gz) 1447 Kb LPC: Ligand-Protein Contacts for 3BVK CSU: Contacts of Structural Units for 3BVK Likely Quarternary Molecular Structure file(s) for 3BVK Structure Factors (3247 Kb) Retrieve 3BVK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BVK from S2C, [Save to disk] Re-refined 3bvk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BVK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BVK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BVK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bvk_B] [3bvk_A] [3bvk_D] [3bvk_F] [3bvk_C] [3bvk] [3bvk_E] SWISS-PROT database: [Q9ZLI1] Domain organization of [FTN_HELPJ] by SWISSPFAM

Other resources with information on 3BVK

Community annotation for 3BVK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---