3BVP Recombination date Jan 07, 2008
title Crystal Structure Of The N-Terminal Catalytic Domain Of Tp90 Integrase
authors P.Yuan, G.D.Van Duyne
compound source
Molecule: Tp901-1 Integrase
Chain: A, B
Fragment: N-Terminal Catalytic Domain
Synonym: Int
Engineered: Yes
Organism_scientific: Lactococcus Phage Tp901-1
Gene: Int
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgv1216
symmetry Space Group: P 41 21 2
R_factor 0.198 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.229 67.229 174.565 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
note 3BVP is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTetrameric structure of a serine integrase catalytic domain., Yuan P, Gupta K, Van Duyne GD, Structure. 2008 Aug 6;16(8):1275-86. PMID:18682229
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3bvp.pdb1.gz) 91 Kb
  • CSU: Contacts of Structural Units for 3BVP
  • Likely Quarternary Molecular Structure file(s) for 3BVP
  • Structure Factors (539 Kb)
  • Retrieve 3BVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BVP from S2C, [Save to disk]
  • Re-refined 3bvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BVP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BVP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bvp_B] [3bvp] [3bvp_A]
  • SWISS-PROT database: [Q38184]
  • Domain organization of [Q38184_9CAUD] by SWISSPFAM
  • Domain found in 3BVP: [Resolvase ] by SMART
  • Other resources with information on 3BVP
  • Community annotation for 3BVP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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