3BVQ Hydrolase date Jan 07, 2008
title Crystal Structure Of Apo Noti Restriction Endonuclease
authors A.R.Lambert, D.Sussman, B.Shen, B.L.Stoddard
compound source
Molecule: Noti Restriction Endonuclease
Chain: A, B
Engineered: Yes
 Organism_scientific: Nocardia Otitidiscaviarum
Organism_taxid: 1823
Gene: Notir
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.262 R_Free 0.335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.893 74.893 274.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand FE, MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • endonuclease activity


    • Primary referenceStructures of the Rare-Cutting Restriction Endonuclease NotI Reveal a Unique Metal Binding Fold Involved in DNA Binding., Lambert AR, Sussman D, Shen B, Maunus R, Nix J, Samuelson J, Xu SY, Stoddard BL, Structure. 2008 Apr;16(4):558-69. PMID:18400177
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3bvq.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 3BVQ
  • CSU: Contacts of Structural Units for 3BVQ
  • Likely Quarternary Molecular Structure file(s) for 3BVQ
  • Structure Factors (354 Kb)
  • Retrieve 3BVQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BVQ from S2C, [Save to disk]
  • Re-refined 3bvq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BVQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BVQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BVQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bvq_A] [3bvq] [3bvq_B]
  • SWISS-PROT database: [Q2I6W2]
  • Domain organization of [Q2I6W2_9NOCA] by SWISSPFAM
    • Other resources with information on 3BVQ
  • Community annotation for 3BVQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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