3BWE	Chaperone	date	Jan 09, 2008
title	Crystal Structure Of Aggregated Form Of Dj1
authors	S.S.Cha
compound		source
Molecule: Protein Dj-1 Chain: A, B, C, D, E, F, G Synonym: Oncogene Dj1, Parkinson Disease Protein 7 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Park7 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.232 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 193.616 102.582 85.535 90.00 113.69 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	MSE, PO4	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, G, E, B transcription coactivator ac... peroxiredoxin activity glyoxalase (glycolic acid-fo... synaptic transmission, dopam... negative regulation of prote... positive regulation of pepti... dopamine uptake involved in ... positive regulation of L-dop...
Primary reference	Crystal structure of filamentous aggregates of human DJ-1 formed in an inorganic phosphate-dependent manner., Cha SS, Jung HI, Jeon H, An YJ, Kim IK, Yun S, Ahn HJ, Chung KC, Lee SH, Suh PG, Kang SO, J Biol Chem. 2008 Dec 5;283(49):34069-75. Epub 2008 Oct 14. PMID:18922803

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk] Biological Unit Coordinates (3bwe.pdb1.gz) 59 Kb Biological Unit Coordinates (3bwe.pdb2.gz) 59 Kb Biological Unit Coordinates (3bwe.pdb3.gz) 58 Kb Biological Unit Coordinates (3bwe.pdb4.gz) 56 Kb LPC: Ligand-Protein Contacts for 3BWE CSU: Contacts of Structural Units for 3BWE Likely Quarternary Molecular Structure file(s) for 3BWE Structure Factors (682 Kb) Retrieve 3BWE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BWE from S2C, [Save to disk] Re-refined 3bwe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BWE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BWE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BWE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bwe_D] [3bwe_E] [3bwe] [3bwe_A] [3bwe_C] [3bwe_G] [3bwe_B] [3bwe_F] SWISS-PROT database: [Q99497] Domain organization of [PARK7_HUMAN] by SWISSPFAM

Other resources with information on 3BWE

Community annotation for 3BWE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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