3BWF Transferase date Jan 09, 2008
title Crystal Structure Of The Human Pim1 In Complex With An Osmiu
authors J.Maksimoska, P.Filippakopoulos, S.Knapp, E.Meggers
compound source
Molecule: Proto-Oncogene Serinethreonine-Protein Kinase Pi
Chain: A
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Pim1
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plic-Sgc1
symmetry Space Group: P 65
R_factor 0.168 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.458 98.458 81.362 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.35 Å
ligand DWC, SO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSimilar biological activities of two isostructural ruthenium and osmium complexes., Maksimoska J, Williams DS, Atilla-Gokcumen GE, Smalley KS, Carroll PJ, Webster RD, Filippakopoulos P, Knapp S, Herlyn M, Meggers E, Chemistry. 2008;14(16):4816-22. PMID:18425743
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3bwf.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3BWF
  • CSU: Contacts of Structural Units for 3BWF
  • Likely Quarternary Molecular Structure file(s) for 3BWF
  • Structure Factors (280 Kb)
  • Retrieve 3BWF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BWF from S2C, [Save to disk]
  • Re-refined 3bwf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BWF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BWF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BWF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bwf_A] [3bwf]
  • SWISS-PROT database: [P11309]
  • Domain organization of [PIM1_HUMAN] by SWISSPFAM
  • Domain found in 3BWF: [S_TKc ] by SMART
  • Other resources with information on 3BWF
  • Community annotation for 3BWF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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