4V62 Crystal Structure of cyanobacterial Photosystem II date
authors Guskov, A., Gabdulkhakov, A., Kern, J., Broser, M., Zouni, A., Saenger, W.
compound source
symmetry
R_factor
R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
note 4V62 supersedes 3BZ1, 3BZ2
Gene
Ontology
ChainFunctionProcessComponent
AA, BA


AC, BC


AD, BD


AF, BF


AH, BH


AM, BM


AO, BO


AT, BT


AV, BV


AX, BX


AZ, BZ


Ay, By


BB, AB


BE, AE


BI, AI


BJ, AJ


BK, AK


BL, AL


BU, AU


Primary referenceCyanobacterial photosystem II at 2.9-A resolution and the role of quinones, lipids, channels and chloride., Guskov A, Kern J, Gabdulkhakov A, Broser M, Zouni A, Saenger W, Nat Struct Mol Biol. 2009 Mar;16(3):334-42. Epub 2009 Feb 15. PMID:19219048
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (992 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V62
  • Structure Factors (1812 Kb)
  • Retrieve 4V62 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V62 from S2C, [Save to disk]
    • View 4V62 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V62
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v62_AY] [4v62_AK] [4v62_BH] [4v62] [4v62_BJ] [4v62_AO] [4v62_AD] [4v62_BI] [4v62_BM] [4v62_BA] [4v62_AU] [4v62_AB] [4v62_AL] [4v62_AM] [4v62_BZ] [4v62_AZ] [4v62_BU] [4v62_AF] [4v62_AT] [4v62_AX] [4v62_AA] [4v62_BF] [4v62_AI] [4v62_BK] [4v62_Ay] [4v62_BE] [4v62_BO] [4v62_AH] [4v62_BC] [4v62_BX] [4v62_AE] [4v62_AJ] [4v62_By] [4v62_AC] [4v62_BT] [4v62_BV] [4v62_BL] [4v62_AV] [4v62_BB] [4v62_BD] [4v62_BY]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4V62
  • Community annotation for 4V62 at PDBWiki (http://pdbwiki.org)

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