3BZH	Ligase	date	Jan 18, 2008
title	Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E
authors	J.R.Walker, G.V.Avvakumov, S.Xue, Y.Li, J.Weigelt, C.H.Arrowsmith A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Structural Genomics C (Sgc)
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 E1 Chain: A Synonym: Ubiquitin-Protein Ligase E1, Ubiquitin Carrier Pro Ubch6; Ec: 6.3.2.19 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2e1, Ubch6 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mhl
symmetry	Space Group: P 31 2 1	R_factor 0.205 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.630 51.630 109.437 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	GOL	enzyme	Ligase E.C.6.3.2.19 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	A human ubiquitin conjugating enzyme (E2)-HECT E3 ligase structure-function screen., Sheng Y, Hong JH, Doherty R, Srikumar T, Shloush J, Avvakumov GV, Walker JR, Xue S, Neculai D, Wan JW, Kim SK, Arrowsmith CH, Raught B, Dhe-Paganon S, Mol Cell Proteomics. 2012 Aug;11(8):329-41. Epub 2012 Apr 10. PMID:22496338

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (3bzh.pdb1.gz) 108 Kb LPC: Ligand-Protein Contacts for 3BZH CSU: Contacts of Structural Units for 3BZH Likely Quarternary Molecular Structure file(s) for 3BZH Structure Factors (331 Kb) Retrieve 3BZH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BZH from S2C, [Save to disk] Re-refined 3bzh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BZH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BZH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3BZH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bzh] [3bzh_A] SWISS-PROT database: [P51965] Domain organization of [UB2E1_HUMAN] by SWISSPFAM Domain found in 3BZH: [UBCc ] by SMART

Other resources with information on 3BZH

Community annotation for 3BZH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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