3C0C Endocytosis date Jan 19, 2008
title X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain
authors P.J.Loll, E.Swain
compound source
Molecule: Endophilin-A2
Chain: A
Fragment: Sh3 Domain
Synonym: Endophilin-2, Sh3 Domain-Containing Grb2-Like Prot Domain Protein 2b, Extra Eleven-Nineteen Leukemia Fusion Ge Protein, Een, Een Fusion Partner Of Mll;
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Sh3gl1, Sh3p8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Gst-Parallel
symmetry Space Group: P 43 21 2
R_factor 0.196 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.970 64.970 41.270 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (3c0c.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 3C0C
  • CSU: Contacts of Structural Units for 3C0C
  • Likely Quarternary Molecular Structure file(s) for 3C0C
  • Structure Factors (435 Kb)
  • Retrieve 3C0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C0C from S2C, [Save to disk]
  • Re-refined 3c0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3C0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3C0C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C0C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c0c_A] [3c0c]
  • SWISS-PROT database: [O35964]
  • Domain organization of [SH3G1_RAT] by SWISSPFAM
  • Domain found in 3C0C: [SH3 ] by SMART
    • Other resources with information on 3C0C
  • Community annotation for 3C0C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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