3C0O Toxin date Jan 21, 2008
title Crystal Structure Of The Proaerolysin Mutant Y221g Complexed Mannose-6-Phosphate
authors L.Pernot, M.Schiltz, S.Thurnheer, S.E.Burr, G.Van Der Goot
compound source
Molecule: Aerolysin
Chain: A, B
Synonym: Proaerolysin
Engineered: Yes
Mutation: Yes
 Organism_scientific: Aeromonas Hydrophila
Organism_taxid: 644
Gene: Aera
Expression_system: Aeromonas Salmonicida
Expression_system_taxid: 645
Expression_system_strain: Cd3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmmb66eh
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.954 90.780 165.805 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ACT, M6P enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • toxin activity


    • Primary referenceMolecular assembly of the aerolysin pore reveals a swirling membrane-insertion mechanism., Degiacomi MT, Iacovache I, Pernot L, Chami M, Kudryashev M, Stahlberg H, van der Goot FG, Dal Peraro M, Nat Chem Biol. 2013 Oct;9(10):623-9. doi: 10.1038/nchembio.1312. Epub 2013 Aug 4. PMID:23912165
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • Biological Unit Coordinates (3c0o.pdb1.gz) 293 Kb
  • LPC: Ligand-Protein Contacts for 3C0O
  • CSU: Contacts of Structural Units for 3C0O
  • Likely Quarternary Molecular Structure file(s) for 3C0O
  • Structure Factors (567 Kb)
  • Retrieve 3C0O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C0O from S2C, [Save to disk]
  • Re-refined 3c0o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3C0O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3C0O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C0O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c0o] [3c0o_A] [3c0o_B]
  • SWISS-PROT database: [P09167]
  • Belongs to the aerolysin channel-forming toxin (aerolysin) family according to TCDB.
  • Domain organization of [AERA_AERHY] by SWISSPFAM
  • Domain found in 3C0O: [Aerolysin ] by SMART
    • Other resources with information on 3C0O
  • Community annotation for 3C0O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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