3C25	Hydrolase Dna	date	Jan 24, 2008
title	Crystal Structure Of Noti Restriction Endonuclease Bound To Dna
authors	A.R.Lambert, D.Sussman, B.Shen, B.L.Stoddard
compound		source
Molecule: Dna (5'- D(Dcpdgpdgpdapdgpdgpdcpdgpdcpdgpdgpdcpdcpdgp Pdcpdgpdcpdcpdg)-3'); Chain: C Engineered: Yes		Synthetic: Yes Other_details: Synthetic Dna Construct Containing Cognate Recognition Sequence Of Noti;
Molecule: Dna (5'- D(Dcpdgpdgpdcpdgpdgpdcpdgpdcpdgpdgpdcpdcpdgp Pdcpdtpdcpdcpdg)-3'); Chain: D Engineered: Yes		Synthetic: Yes Other_details: Synthetic Dna Construct Containing Cognate Recognition Sequence Of Noti;
Molecule: Noti Restriction Endonuclease Chain: A, B Engineered: Yes		Organism_scientific: Nocardia Otitidiscaviarum Organism_taxid: 1823 Gene: Notir Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.223 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.890 81.712 73.583 90.00 99.51 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CA, FE	enzyme
note	3C25 supersedes 3BVR
Gene Ontology	Chain Function Process Component A, B endonuclease activity
Primary reference	Structures of the Rare-Cutting Restriction Endonuclease NotI Reveal a Unique Metal Binding Fold Involved in DNA Binding., Lambert AR, Sussman D, Shen B, Maunus R, Nix J, Samuelson J, Xu SY, Stoddard BL, Structure. 2008 Apr;16(4):558-69. PMID:18400177

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk] Biological Unit Coordinates (3c25.pdb1.gz) 125 Kb LPC: Ligand-Protein Contacts for 3C25 CSU: Contacts of Structural Units for 3C25 Likely Quarternary Molecular Structure file(s) for 3C25 Structure Factors (206 Kb) Retrieve 3C25 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3C25 from S2C, [Save to disk] Re-refined 3c25 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3C25 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3C25

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3C25, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3c25_A] [3c25_C] [3c25_B] [3c25_D] [3c25] SWISS-PROT database: [Q2I6W2] Domain organization of [Q2I6W2_9NOCA] by SWISSPFAM

Other resources with information on 3C25

Community annotation for 3C25 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---