3C3K Isomerase date Jan 28, 2008
title Crystal Structure Of An Uncharacterized Protein From Actinob Succinogenes
authors V.N.Malashkevich, R.Toro, A.J.Meyer, J.M.Sauder, S.K.Burley, S.C. York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Alanine Racemase
Chain: A, B
Fragment: Residues 54-327
Ec: 5.1.1.1
Engineered: Yes
Organism_scientific: Actinobacillus Succinogenes
Organism_taxid: 339671
Strain: 130z
Gene: Asuc_0357
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.888 67.602 204.802 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.99 Å
ligand CL, GOL enzyme Isomerase E.C.5.1.1.1 BRENDA
Gene ASUC
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3c3k.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 3C3K
  • CSU: Contacts of Structural Units for 3C3K
  • Likely Quarternary Molecular Structure file(s) for 3C3K
  • Structure Factors (792 Kb)
  • Retrieve 3C3K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C3K from S2C, [Save to disk]
  • Re-refined 3c3k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C3K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C3K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C3K, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c3k_A] [3c3k] [3c3k_B]
  • SWISS-PROT database: [A6VL88]
  • Domain organization of [A6VL88_ACTSZ] by SWISSPFAM
  • Other resources with information on 3C3K
  • Community annotation for 3C3K at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science