3C3W Transcription date Jan 28, 2008
title Crystal Structure Of The Mycobacterium Tuberculosis Hypoxic Regulator Dosr
authors G.Wisedchaisri, M.Wu, D.R.Sherman, W.G.J.Hol
compound source
Molecule: Two Component Transcriptional Regulatory Protein
Chain: A, B
Synonym: Probably Luxruhpa-Family, Devr, Dna-Binding Respo Regulator, Luxr Family;
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Devr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21-D(+)
symmetry Space Group: P 1 21 1
R_factor 0.186 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.107 98.080 53.710 90.00 93.81 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of the response regulator DosR from Mycobacterium tuberculosis suggest a helix rearrangement mechanism for phosphorylation activation., Wisedchaisri G, Wu M, Sherman DR, Hol WG, J Mol Biol. 2008 Apr 18;378(1):227-42. Epub 2008 Feb 26. PMID:18353359
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3c3w.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3C3W
  • CSU: Contacts of Structural Units for 3C3W
  • Likely Quarternary Molecular Structure file(s) for 3C3W
  • Structure Factors (356 Kb)
  • Retrieve 3C3W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C3W from S2C, [Save to disk]
  • Re-refined 3c3w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C3W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C3W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C3W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c3w_B] [3c3w] [3c3w_A]
  • SWISS-PROT database: [P95193]
  • Domain organization of [DEVR_MYCTU] by SWISSPFAM
  • Domains found in 3C3W: [HTH_LUXR] [REC ] by SMART
  • Other resources with information on 3C3W
  • Community annotation for 3C3W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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