3C4C	Transferase	date	Jan 29, 2008
title	B-Raf Kinase In Complex With Plx4720
authors	K.Y.J.Zhang, W.Wang
compound		source
Molecule: B-Raf Proto-Oncogene Serinethreonine-Protein Kin Chain: A, B Fragment: Kinase Domain Synonym: P94, V-Raf Murine Sarcoma Viral Oncogene Homolog B Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Braf, Braf1, Rafb1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Ril Expression_system_vector_type: Vector Expression_system_vector: Pet29a
symmetry	Space Group: P 21 21 21	R_factor 0.259 R_Free 0.303
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.574 105.502 110.150 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.57 Å
ligand	324 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery of a selective inhibitor of oncogenic B-Raf kinase with potent antimelanoma activity., Tsai J, Lee JT, Wang W, Zhang J, Cho H, Mamo S, Bremer R, Gillette S, Kong J, Haass NK, Sproesser K, Li L, Smalley KS, Fong D, Zhu YL, Marimuthu A, Nguyen H, Lam B, Liu J, Cheung I, Rice J, Suzuki Y, Luu C, Settachatgul C, Shellooe R, Cantwell J, Kim SH, Schlessinger J, Zhang KY, West BL, Powell B, Habets G, Zhang C, Ibrahim PN, Hirth P, Artis DR, Herlyn M, Bollag G, Proc Natl Acad Sci U S A. 2008 Feb 26;105(8):3041-6. Epub 2008 Feb 19. PMID:18287029

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (3c4c.pdb1.gz) 43 Kb Biological Unit Coordinates (3c4c.pdb2.gz) 42 Kb LPC: Ligand-Protein Contacts for 3C4C CSU: Contacts of Structural Units for 3C4C Likely Quarternary Molecular Structure file(s) for 3C4C Retrieve 3C4C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3C4C from S2C, [Save to disk]

View 3C4C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3C4C

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3C4C, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3c4c_B] [3c4c] [3c4c_A] SWISS-PROT database: [P15056] Domain organization of [BRAF_HUMAN] by SWISSPFAM Domain found in 3C4C: [STYKc ] by SMART

Other resources with information on 3C4C

Community annotation for 3C4C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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