3C64 Cd36-Binding Protein,Cell Adhesion date Feb 02, 2008
title The Mc179 Portion Of The Cysteine-Rich Interdomain Region (Cidr) Of A Plasmodium Falciparum Erythrocyte Membrane Protein-1 (Pfemp1)
authors M.M.Klein, A.G.Gittis, H.P.Su, M.O.Makobongo, J.M.Moore, S.Singh, L.H.Miller, D.N.Garboczi
compound source
Molecule: Pfemp1 Variant 2 Of Strain Mc
Chain: A
Fragment: Unp Residues 576-754
Engineered: Yes
 Organism_scientific: Plasmodium Falciparum
Strain: Malayan Camp
Gene: Mcvar-2 Pfemp1
Expression_system: Escherichia Coli
Expression_system_strain: Bl21-De3-(Ril)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plm1
symmetry Space Group: P 65 2 2
R_factor 0.246 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.310 93.310 85.710 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand CL, PG4 enzyme
note 3C64 is a representative structure
Primary referenceThe cysteine-rich interdomain region from the highly variable plasmodium falciparum erythrocyte membrane protein-1 exhibits a conserved structure., Klein MM, Gittis AG, Su HP, Makobongo MO, Moore JM, Singh S, Miller LH, Garboczi DN, PLoS Pathog. 2008 Sep 5;4(9):e1000147. PMID:18773118
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (3c64.pdb1.gz) 53 Kb
  • Biological Unit Coordinates (3c64.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 3C64
  • CSU: Contacts of Structural Units for 3C64
  • Likely Quarternary Molecular Structure file(s) for 3C64
  • Structure Factors (73 Kb)
  • Retrieve 3C64 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C64 from S2C, [Save to disk]
  • Re-refined 3c64 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3C64 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3C64
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C64, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c64] [3c64_A]
  • SWISS-PROT database: [Q25733]
  • Domain organization of [Q25733_PLAFA] by SWISSPFAM
    • Other resources with information on 3C64
  • Community annotation for 3C64 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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