3C6E Viral Protein date Feb 04, 2008
title Crystal Structure Of The Precursor Membrane Protein- Envelop Heterodimer From The Dengue 2 Virus At Neutral Ph
authors L.Li
compound source
Molecule: Envelope Protein E
Chain: A
Fragment: Unp Residues 281-674
Engineered: Yes
Organism_scientific: Dengue Virus 2 Thailand1668184
Organism_taxid: 31634
Strain: 16681
Expression_system: Drosophila
Expression_system_common: Fruit Flies
Expression_system_taxid: 7215
Expression_system_strain: S2 Cells
Expression_system_vector_type: Pmtbipv5-His A
Expression_system_plasmid: Pmtbipprm-Tev-E

Molecule: Prm
Chain: C
Fragment: Unp Residues 115-244
Engineered: Yes

Organism_scientific: Dengue Virus
Organism_taxid: 11060
Strain: 2
Expression_system: Drosophila
Expression_system_common: Fruit Flies
Expression_system_taxid: 7215
Expression_system_strain: S2 Cells
Expression_system_vector_type: Pmtbipv5-His A
Expression_system_plasmid: Pmtbipprm-Tev-E
symmetry Space Group: P 21 21 2
R_factor 0.250 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.104 108.366 108.956 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand MAN, NAG, NDG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


C


Primary referenceThe flavivirus precursor membrane-envelope protein complex: structure and maturation., Li L, Lok SM, Yu IM, Zhang Y, Kuhn RJ, Chen J, Rossmann MG, Science. 2008 Mar 28;319(5871):1830-4. PMID:18369147
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (3c6e.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 3C6E
  • CSU: Contacts of Structural Units for 3C6E
  • Likely Quarternary Molecular Structure file(s) for 3C6E
  • Structure Factors (401 Kb)
  • Retrieve 3C6E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C6E from S2C, [Save to disk]
  • Re-refined 3c6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C6E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C6E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c6e_C] [3c6e_A] [3c6e]
  • SWISS-PROT database: [O09234]
  • Domain organization of [O09234_DEN26] by SWISSPFAM
  • Other resources with information on 3C6E
  • Community annotation for 3C6E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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