3C6N	Signaling Protein	date	Feb 04, 2008
title	Small Molecule Agonists And Antagonists Of F-Box Protein-Sub Interactions In Auxin Perception And Signaling
authors	X.Tan, N.Zheng, K.Hayashi
compound		source
Molecule: Skp1-Like Protein 1a Chain: A Synonym: Skp1-Like 1, Ufo-Binding Protein 1 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: Skp1a, Ask1, Skp1, Uip1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector: Baculovirus
Molecule: Transport Inhibitor Response 1 Chain: B Synonym: F-Boxlrr-Repeat Protein 1 Engineered: Yes		Organism_scientific: Arabidopsis Thaliana Organism_common: Thale Cress Organism_taxid: 3702 Gene: Tir1, Fbl1, Wei1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector: Baculovirus
symmetry	Space Group: C 1 2 1	R_factor 0.185 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.510 80.661 125.071 90.00 104.95 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	2S8, IHP	enzyme
Gene Ontology	Chain Function Process Component A B SCF ubiquitin ligase complex...
Primary reference	Small-molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling., Hayashi K, Tan X, Zheng N, Hatate T, Kimura Y, Kepinski S, Nozaki H, Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5632-7. Epub 2008 Apr 7. PMID:18391211

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (3c6n.pdb1.gz) 103 Kb LPC: Ligand-Protein Contacts for 3C6N CSU: Contacts of Structural Units for 3C6N Likely Quarternary Molecular Structure file(s) for 3C6N Structure Factors (456 Kb) Retrieve 3C6N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3C6N from S2C, [Save to disk] Re-refined 3c6n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3C6N in 3D

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Visual 3D analysis of 3C6N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3C6N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3c6n_A] [3c6n] [3c6n_B] SWISS-PROT database: [Q39255] [Q570C0] Domain organization of [SKP1A_ARATH] [TIR1_ARATH] by SWISSPFAM Domains found in 3C6N: [FBOX] [LRR] [Skp1 ] by SMART

Other resources with information on 3C6N

Community annotation for 3C6N at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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