3C8P Toxin date Feb 13, 2008
title X-Ray Structure Of Viscotoxin A1 From Viscum Album L.
authors A.Pal, J.E.Debreczeni, M.Sevvana, T.Gruene, B.Kahle, A.Zeeck, G.M.Sheldrick
compound source
Molecule: Viscotoxin A1
Chain: A, B
Organism_scientific: Viscum Album
Organism_common: European Mistletoe
Organism_taxid: 3972
symmetry Space Group: P 43 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.730 65.730 47.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.25 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of viscotoxins A1 and B2 from European mistletoe solved using native data alone., Pal A, Debreczeni JE, Sevvana M, Gruene T, Kahle B, Zeeck A, Sheldrick GM, Acta Crystallogr D Biol Crystallogr. 2008 Sep;64(Pt 9):985-92. Epub 2008, Aug 13. PMID:18703848
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3c8p.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 3C8P
  • Likely Quarternary Molecular Structure file(s) for 3C8P
  • Structure Factors (576 Kb)
  • Retrieve 3C8P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C8P from S2C, [Save to disk]
  • Re-refined 3c8p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C8P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C8P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C8P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c8p_B] [3c8p] [3c8p_A]
  • SWISS-PROT database: [D0VWT3] [P83554]
  • Domain organization of [D0VWT3_VISAL] [THNC_VISAL] by SWISSPFAM
  • Other resources with information on 3C8P
  • Community annotation for 3C8P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science