3C9L Signaling Protein date Feb 16, 2008
title Structure Of Ground-State Bovine Rhodospin In A Hexagonal Cr
authors R.E.Stenkamp
compound source
Molecule: Rhodopsin
Chain: A
Organism_scientific: Bos Taurus
Organism_common: Bovine
symmetry Space Group: P 64
R_factor 0.188 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.820 103.820 76.590 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.65 Å
ligand ACE, BMA, C8E, LDA, NAG, PEF, PLM, RET, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAlternative models for two crystal structures of bovine rhodopsin., Stenkamp RE, Acta Crystallogr D Biol Crystallogr. 2008 Aug;64(Pt 8):902-4. Epub 2008, Jul 17. PMID:18645239
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (3c9l.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3C9L
  • CSU: Contacts of Structural Units for 3C9L
  • Likely Quarternary Molecular Structure file(s) for 3C9L
  • Structure Factors (100 Kb)
  • Retrieve 3C9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C9L from S2C, [Save to disk]
  • Re-refined 3c9l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C9L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C9L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c9l_A] [3c9l]
  • SWISS-PROT database: [P02699]
  • Domain organization of [OPSD_BOVIN] by SWISSPFAM
  • Other resources with information on 3C9L
  • Community annotation for 3C9L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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