3C9S Transferase date Feb 18, 2008
title Aathil Complexed With Amppcp
authors K.M.Mcculloch, C.Kinsland, T.P.Begley, S.E.Ealick
compound source
Molecule: Thiamine Monophosphate Kinase
Chain: A, B
Ec: 2.7.4.16
Engineered: Yes
Organism_scientific: Aquifex Aeolicus
Organism_taxid: 63363
Gene: Thil
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Br2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Xf1
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.204 67.137 203.472 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ACP, MG enzyme Transferase E.C.2.7.4.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural studies of thiamin monophosphate kinase in complex with substrates and products(,)., McCulloch KM, Kinsland C, Begley TP, Ealick SE, Biochemistry. 2008 Mar 25;47(12):3810-21. Epub 2008 Mar 1. PMID:18311927
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (3c9s.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3C9S
  • CSU: Contacts of Structural Units for 3C9S
  • Likely Quarternary Molecular Structure file(s) for 3C9S
  • Structure Factors (316 Kb)
  • Retrieve 3C9S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C9S from S2C, [Save to disk]
  • Re-refined 3c9s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C9S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C9S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C9S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c9s_B] [3c9s_A] [3c9s]
  • SWISS-PROT database: [O67883]
  • Domain organization of [O67883_AQUAE] by SWISSPFAM
  • Other resources with information on 3C9S
  • Community annotation for 3C9S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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