3C9W Transferase date Feb 18, 2008
title Crystal Structure Of Erk-2 With Hypothemycin Covalently Boun
authors R.J.Rosenfeld
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A, B
Synonym: Extracellular Signal-Regulated Kinase 2, Erk-2, Mi Activated Protein Kinase 2, Map Kinase 2, Mapk 2, P42-Mapk,
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Erk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.815 117.298 65.871 90.00 89.82 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand HMY enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • MAP kinase activity
  • MAP kinase kinase activity


  • Primary referenceMolecular modeling and crystal structure of ERK2-hypothemycin complexes., Rastelli G, Rosenfeld R, Reid R, Santi DV, J Struct Biol. 2008 May 17;. PMID:18571434
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (3c9w.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (3c9w.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3C9W
  • CSU: Contacts of Structural Units for 3C9W
  • Likely Quarternary Molecular Structure file(s) for 3C9W
  • Structure Factors (523 Kb)
  • Retrieve 3C9W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3C9W from S2C, [Save to disk]
  • Re-refined 3c9w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3C9W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3C9W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3C9W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3c9w_B] [3c9w] [3c9w_A]
  • SWISS-PROT database: [P63086]
  • Domain organization of [MK01_RAT] by SWISSPFAM
  • Domain found in 3C9W: [S_TKc ] by SMART
  • Other resources with information on 3C9W
  • Community annotation for 3C9W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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