3CA0 Sugar Binding Protein, Plant Protein date Feb 19, 2008
title Sambucus Nigra Agglutinin II (Sna-II), Hexagonal Crystal For
authors L.Maveyraud, H.Niwa, V.Guillet, R.A.Palmer, C.D.Reynolds, L.Moure
compound source
Molecule: Agglutinin II
Chain: A
Synonym: Sna-II
 Organism_scientific: Sambucus Nigra
Organism_common: European Elder, Elderberry
Tissue: Bark
symmetry Space Group: P 64 2 2
R_factor 0.171 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.204 120.204 177.340 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand ACT, BMA, FUC, MAN, NAG, SO4, XYP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for sugar recognition, including the Tn carcinoma antigen, by the lectin SNA-II from Sambucus nigra., Maveyraud L, Niwa H, Guillet V, Svergun DI, Konarev PV, Palmer RA, Peumans WJ, Rouge P, Van Damme EJ, Reynolds CD, Mourey L, Proteins. 2008 Sep 17. PMID:18798567
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3ca0.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3CA0
  • CSU: Contacts of Structural Units for 3CA0
  • Likely Quarternary Molecular Structure file(s) for 3CA0
  • Structure Factors (783 Kb)
  • Retrieve 3CA0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CA0 from S2C, [Save to disk]
  • Re-refined 3ca0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CA0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CA0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CA0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ca0] [3ca0_A]
  • SWISS-PROT database: [P33183]
  • Domain organization of [NIGB_SAMNI] by SWISSPFAM
  • Domain found in 3CA0: [RICIN ] by SMART
    • Other resources with information on 3CA0
  • Community annotation for 3CA0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science