3CE1 Oxidoreductase date Feb 27, 2008
title Crystal Structure Of The Cuzn Superoxide Dismutase From Cry Liquefaciens Strain N6
authors A.H.Teh, S.Kanamasa, S.Kajiwara, T.Kumasaka
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A
Synonym: Cuzn Superoxide Dismutase
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Cryptococcus Liquefaciens
Organism_taxid: 104408
Strain: N6
Gene: C-Sod1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-22b(+)
symmetry Space Group: C 2 2 21
R_factor 0.149 R_Free 0.166
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.854 111.768 70.456 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand ACT, CU, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • superoxide dismutase activit...


  • Primary referenceStructure of Cu/Zn superoxide dismutase from the heavy-metal-tolerant yeast Cryptococcus liquefaciens strain N6., Teh AH, Kanamasa S, Kajiwara S, Kumasaka T, Biochem Biophys Res Commun. 2008 Sep 26;374(3):475-8. Epub 2008 Jul 18. PMID:18640099
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3ce1.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 3CE1
  • CSU: Contacts of Structural Units for 3CE1
  • Likely Quarternary Molecular Structure file(s) for 3CE1
  • Structure Factors (323 Kb)
  • Retrieve 3CE1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CE1 from S2C, [Save to disk]
  • Re-refined 3ce1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CE1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CE1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CE1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ce1_A] [3ce1]
  • SWISS-PROT database: [A0ZPR9]
  • Domain organization of [A0ZPR9_9TREE] by SWISSPFAM
  • Other resources with information on 3CE1
  • Community annotation for 3CE1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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