3CFY	Structural Genomics, Unknown Function	date	Mar 04, 2008
title	Crystal Structure Of Signal Receiver Domain Of Putative Luxo Protein From Vibrio Parahaemolyticus
authors	Y.Patskovsky, U.A.Ramagopal, R.Fong, J.Freeman, M.Iizuka, C.Grosh D.Smith, S.R.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New Yo Research Center For Structural Genomics (Nysgxrc)
compound		source
Molecule: Putative Luxo Repressor Protein Chain: A Fragment: Signal Receiver Domain: Residues 2-128 Engineered: Yes		Organism_scientific: Vibrio Parahaemolyticus Rimd 2210633 Organism_taxid: 223926 Strain: Rimd 2210633 Serotype O3:K6 Gene: Vp1469 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_vector: Pet Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry	Space Group: P 42 21 2	R_factor 0.246 R_Free 0.291
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.203 58.203 96.692 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk] Biological Unit Coordinates (3cfy.pdb1.gz) 22 Kb CSU: Contacts of Structural Units for 3CFY Likely Quarternary Molecular Structure file(s) for 3CFY Structure Factors (147 Kb) Retrieve 3CFY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CFY from S2C, [Save to disk] Re-refined 3cfy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CFY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CFY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CFY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cfy] [3cfy_A] SWISS-PROT database: [Q87PN2] Domain organization of [Q87PN2_VIBPA] by SWISSPFAM Domain found in 3CFY: [REC ] by SMART

Other resources with information on 3CFY

Community annotation for 3CFY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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