3CGA Metal Binding Protein date Mar 05, 2008
title Crystal Structure Of Metastasis-Associated Protein S100a4 In Active, Calcium-Bound Form
authors P.Pathuri, H.Luecke
compound source
Molecule: Protein S100-A4
Chain: A, B
Synonym: S100 Calcium-Binding Protein A4, Metastasin, Prote Placental Calcium-Binding Protein, Calvasculin;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: S100a4, Capl, Mts1
Expression_system: Escherichia Coli
symmetry Space Group: P 65
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.107 47.107 176.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.03 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of metastasis-associated protein S100A4 in the active calcium-bound form., Pathuri P, Vogeley L, Luecke H, J Mol Biol. 2008 Oct 31;383(1):62-77. Epub 2008 May 7. PMID:18783790
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (3cga.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 3CGA
  • CSU: Contacts of Structural Units for 3CGA
  • Likely Quarternary Molecular Structure file(s) for 3CGA
  • Structure Factors (279 Kb)
  • Retrieve 3CGA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CGA from S2C, [Save to disk]
  • Re-refined 3cga structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CGA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CGA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CGA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cga] [3cga_A] [3cga_B]
  • SWISS-PROT database: [P26447]
  • Domain organization of [S10A4_HUMAN] by SWISSPFAM
  • Domain found in 3CGA: [S_100 ] by SMART
  • Other resources with information on 3CGA
  • Community annotation for 3CGA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science