3CGN	Isomerase	date	Mar 06, 2008
title	Crystal Structure Of Thermophilic Slyd
authors	P.Neumann, C.Loew, M.T.Stubbs, J.Balbach
compound		source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Chain: A Synonym: Slyd Ec: 5.2.1.8 Engineered: Yes		Organism_scientific: Thermus Thermophilus Organism_taxid: 300852 Strain: Hb8 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Pet-Vector Expression_system_plasmid: Pet11a
symmetry	Space Group: F 2 2 2	R_factor 0.209 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.180 85.090 92.220 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	SO4	enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A peptidyl-prolyl cis-trans is...
Primary reference	Crystal Structure Determination and Functional Characterization of the Metallochaperone SlyD from Thermus thermophilus., Low C, Neumann P, Tidow H, Weininger U, Haupt C, Friedrich-Epler B, Scholz C, Stubbs MT, Balbach J, J Mol Biol. 2010 Mar 15. PMID:20230833

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk] Biological Unit Coordinates (3cgn.pdb1.gz) 25 Kb Biological Unit Coordinates (3cgn.pdb2.gz) 48 Kb LPC: Ligand-Protein Contacts for 3CGN CSU: Contacts of Structural Units for 3CGN Likely Quarternary Molecular Structure file(s) for 3CGN Structure Factors (42 Kb) Retrieve 3CGN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CGN from S2C, [Save to disk] Re-refined 3cgn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CGN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CGN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CGN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cgn] [3cgn_A] SWISS-PROT database: [Q5SLE7] Domain organization of [Q5SLE7_THET8] by SWISSPFAM

Other resources with information on 3CGN

Community annotation for 3CGN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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