3CMY Transcription Regulator Dna date Mar 24, 2008
title Structure Of A Homeodomain In Complex With Dna
authors G.Birrane, J.A.A.Ladias, A.Soni
compound source
Molecule: Paired Box Protein Pax-3
Chain: A
Fragment: Homeodomain (Unp Residues 219-278)
Synonym: Hup2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pax3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-6h

Molecule: 5'-D(Dapdcpdapdtpdapdapdpdcpdgpdapdtp )-3';
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Dtpdgpdtpdapdapdtpdcpdgpdapdtpdtp G)-3';
Chain: C
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 2 2 21
R_factor 0.172 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.325 62.243 92.556 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for DNA Recognition by the Human PAX3 Homeodomain (dagger) (,) (double dagger)., Birrane G, Soni A, Ladias JA, Biochemistry. 2009 Jan 21. PMID:19199574
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (3cmy.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 3CMY
  • CSU: Contacts of Structural Units for 3CMY
  • Likely Quarternary Molecular Structure file(s) for 3CMY
  • Structure Factors (118 Kb)
  • Retrieve 3CMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CMY from S2C, [Save to disk]
  • View 3CMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CMY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CMY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cmy] [3cmy_A] [3cmy_C] [3cmy_B]
  • SWISS-PROT database: [P23760]
  • Domain organization of [PAX3_HUMAN] by SWISSPFAM
  • Domain found in 3CMY: [HOX ] by SMART
  • Other resources with information on 3CMY
  • Community annotation for 3CMY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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