3CQP	Oxidoreductase	date	Apr 03, 2008
title	Human Sod1 G85r Variant, Structure I
authors	X.Cao, S.Antonyuk, S.V.Seetharaman, L.J.Whitson, A.B.Taylor, S.P. R.W.Strange, P.A.Doucette, J.S.Valentine, A.Tiwari, L.J.Hayward J.A.Cohlberg, S.S.Hasnain, P.J.Hart
compound		source
Molecule: Superoxide Dismutase [Cu-Zn] Chain: A, B, C, D Ec: 1.15.1.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sod1 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932 Expression_system_strain: Egy118 Expression_system_vector_type: Plasmid Expression_system_plasmid: Yep351-Hsod
symmetry	Space Group: I 21 21 21	R_factor 0.183 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.472 116.808 147.764 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	CU, MLI, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B superoxide dismutase activit... protein binding anterograde axonal transport... retrograde axonal transport
Primary reference	Structures of the G85R variant of SOD1 in Familial ALS., Cao X, Antonyuk S, Seetharaman SV, Whitson LJ, Taylor AB, Holloway SP, Strange RW, Doucette PA, Valentine JS, Tiwari A, Hayward LJ, Padua S, Cohlberg JA, Hasnain SS, Hart PJ, J Biol Chem. 2008 Mar 31;. PMID:18378676

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (3cqp.pdb1.gz) 45 Kb Biological Unit Coordinates (3cqp.pdb2.gz) 50 Kb LPC: Ligand-Protein Contacts for 3CQP CSU: Contacts of Structural Units for 3CQP Likely Quarternary Molecular Structure file(s) for 3CQP Structure Factors (758 Kb) Retrieve 3CQP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CQP from S2C, [Save to disk] Re-refined 3cqp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CQP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CQP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CQP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cqp] [3cqp_D] [3cqp_C] [3cqp_A] [3cqp_B] SWISS-PROT database: [P00441] Domain organization of [SODC_HUMAN] by SWISSPFAM

Other resources with information on 3CQP

Community annotation for 3CQP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---