3CRH Hormone date Apr 07, 2008
title Crystal Structure Of Human Fibroblast Growth Factor-1 With M Glu81ser And Lys101ala
authors A.K.Meher, E.Honjo, R.Kuroki, J.Lee, T.Somasundaram, M.Blaber
compound source
Molecule: Heparin-Binding Growth Factor 1
Chain: A, B
Synonym: Hbgf-1, Acidic Fibroblast Growth Factor, Afgf, Bet Endothelial Cell Growth Factor, Ecgf-Beta;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf1, Fgfa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21de3
Expression_system_vector_type: Pet
Expression_system_plasmid: Pet21a(+)
symmetry Space Group: C 2 2 21
R_factor 0.183 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.980 92.480 107.540 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEngineering an improved crystal contact across a solvent-mediated interface of human fibroblast growth factor 1., Meher AK, Blaber SI, Lee J, Honjo E, Kuroki R, Blaber M, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Nov 1;65(Pt, 11):1136-40. Epub 2009 Oct 30. PMID:19923735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3crh.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (3crh.pdb2.gz) 25 Kb
  • Biological Unit Coordinates (3crh.pdb3.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3CRH
  • CSU: Contacts of Structural Units for 3CRH
  • Likely Quarternary Molecular Structure file(s) for 3CRH
  • Structure Factors (296 Kb)
  • Retrieve 3CRH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CRH from S2C, [Save to disk]
  • Re-refined 3crh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CRH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CRH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CRH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3crh] [3crh_A] [3crh_B]
  • SWISS-PROT database: [P05230]
  • Domain organization of [FGF1_HUMAN] by SWISSPFAM
  • Domain found in 3CRH: [FGF ] by SMART
  • Other resources with information on 3CRH
  • Community annotation for 3CRH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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