3CS4 Gene Regulation date Apr 09, 2008
title Structure-Based Design Of A Superagonist Ligand For The Vita Nuclear Receptor
authors S.Hourai, L.C.Rodriguez, P.Antony, B.Reina-San-Martin, F.Ciesiel B.C.Magnier, K.Schoonjans, A.Mourino, N.Rochel, D.Moras
compound source
Molecule: Vitamin D3 Receptor
Chain: A
Fragment: Unp Residues 118-427
Synonym: Vdr, 1,25-Dihydroxyvitamin D3 Receptor, Nuclear Re Subfamily 1 Group I Member 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vdr, Nr1i1
Expression_system: Escherichia Coli
Expression_system_vector: Bl21de3
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.007 51.370 132.236 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand COV enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based design of a superagonist ligand for the vitamin D nuclear receptor., Hourai S, Rodrigues LC, Antony P, Reina-San-Martin B, Ciesielski F, Magnier BC, Schoonjans K, Mourino A, Rochel N, Moras D, Chem Biol. 2008 Apr;15(4):383-92. PMID:18420145
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (3cs4.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3CS4
  • CSU: Contacts of Structural Units for 3CS4
  • Likely Quarternary Molecular Structure file(s) for 3CS4
  • Structure Factors (176 Kb)
  • Retrieve 3CS4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CS4 from S2C, [Save to disk]
  • Re-refined 3cs4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CS4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CS4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CS4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cs4_A] [3cs4]
  • SWISS-PROT database: [Q5PSV3]
  • Domain organization of [Q5PSV3_HUMAN] by SWISSPFAM
  • Domain found in 3CS4: [HOLI ] by SMART
  • Other resources with information on 3CS4
  • Community annotation for 3CS4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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