3CSF Transferase date Apr 09, 2008
title Crystal Structure Of Pi3k P110gamma Catalytical Domain In Co Organoruthenium Inhibitor Dw2
authors P.Xie, R.Marmorstein
compound source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform;
Chain: A
Fragment: Pi3-Kinase P110 Subunit Gamma
Synonym: Pi3-Kinase P110 Subunit Gamma, Ptdins-3- Kinase Su P110, Pi3k, Pi3kgamma, P110-Pi3k;
Ec: 2.7.1.153
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Pik3cg
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pvl1393
symmetry Space Group: C 1 2 1
R_factor 0.252 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.635 68.082 106.270 90.00 95.26 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand DW2 enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based design of an organoruthenium phosphatidyl-inositol-3-kinase inhibitor reveals a switch governing lipid kinase potency and selectivity., Xie P, Williams DS, Atilla-Gokcumen GE, Milk L, Xiao M, Smalley KS, Herlyn M, Meggers E, Marmorstein R, ACS Chem Biol. 2008 May 16;3(5):305-16. PMID:18484710
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (3csf.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 3CSF
  • CSU: Contacts of Structural Units for 3CSF
  • Likely Quarternary Molecular Structure file(s) for 3CSF
  • Structure Factors (454 Kb)
  • Retrieve 3CSF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CSF from S2C, [Save to disk]
  • Re-refined 3csf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CSF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CSF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CSF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3csf_A] [3csf]
  • SWISS-PROT database: [P48736]
  • Domain organization of [PK3CG_HUMAN] by SWISSPFAM
  • Domains found in 3CSF: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
  • Other resources with information on 3CSF
  • Community annotation for 3CSF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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