3CTA Transferase date Apr 11, 2008
title Crystal Structure Of Riboflavin Kinase From Thermoplasma Aci
authors J.B.Bonanno, M.Rutter, K.T.Bain, M.Mendoza, R.Romero, D.Smith, S.W J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
compound source
Molecule: Riboflavin Kinase
Chain: A
Synonym: Rfk, Ctp:Riboflavin 5'-Phosphotransferase, Ctp-Dep Riboflavin Kinase, Flavokinase;
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Thermoplasma Acidophilum Dsm 1728
Organism_taxid: 273075
Strain: Dsm 1728 Amrc-C165 Ifo 15155 Jcm 9062
Atcc: 25905
Gene: Rfk, Ta1064
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
Expression_system_plasmid: Modified Pet26
symmetry Space Group: C 2 2 21
R_factor 0.236 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.087 82.987 80.544 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Transferase E.C.2.7.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (3cta.pdb1.gz) 59 Kb
  • CSU: Contacts of Structural Units for 3CTA
  • Likely Quarternary Molecular Structure file(s) for 3CTA
  • Structure Factors (620 Kb)
  • Retrieve 3CTA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CTA from S2C, [Save to disk]
  • Re-refined 3cta structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CTA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CTA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CTA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cta_A] [3cta]
  • SWISS-PROT database: [Q9HJA6]
  • Domain organization of [RIFK_THEAC] by SWISSPFAM
  • Other resources with information on 3CTA
  • Community annotation for 3CTA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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