3CVL	Transport Protein	date	Apr 18, 2008
title	Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding D Trypanosoma Brucei Peroxin 5 (Tbpex5)Complexed To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
authors	P.Sampathkumar, C.Roach, P.A.M.Michels, W.G.J.Hol
compound		source
Molecule: Peroxisome Targeting Signal 1 Receptor Pex5 Chain: A Fragment: Binding Domain,Unp Residues 332-655 Engineered: Yes Mutation: Yes		Organism_scientific: Trypanosoma Brucei Organism_taxid: 5691 Gene: Pex5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pskb3
Molecule: T. Brucei Pfk Pts1 Peptide Ac-Heelakl Chain: B Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 1 21 1	R_factor 0.212 R_Free 0.278
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.390 66.360 49.680 90.00 105.13 90.00
method	X-Ray Diffraction	resolution	2.15 Å
Primary reference	Structural insights into the recognition of peroxisomal targeting signal 1 by Trypanosoma brucei peroxin 5., Sampathkumar P, Roach C, Michels PA, Hol WG, J Mol Biol. 2008 Sep 12;381(4):867-80. Epub 2008 Jun 21. PMID:18598704

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (3cvl.pdb1.gz) 47 Kb CSU: Contacts of Structural Units for 3CVL Likely Quarternary Molecular Structure file(s) for 3CVL Structure Factors (230 Kb) Retrieve 3CVL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CVL from S2C, [Save to disk] Re-refined 3cvl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CVL in 3D

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Visual 3D analysis of 3CVL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CVL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cvl] [3cvl_A] [3cvl_B] SWISS-PROT database: [O15648] [Q9U7C3] Belongs to the peroxisomal protein importer (ppi) family according to TCDB. Domain organization of [O15648_9TRYP] [Q9U7C3_9TRYP] by SWISSPFAM Domain found in 3CVL: [TPR ] by SMART

Other resources with information on 3CVL

Community annotation for 3CVL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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