3CVM Blood Clotting date Apr 18, 2008
title High Resolution Structure Of A Stable Plasminogen Activator Type-1 In Its Protease Cleaved Form
authors J.K.Jensen, P.G.W.Gettins
compound source
Molecule: Plasminogen Activator Inhibitor 1
Chain: A, B
Synonym: Pai-1, Endothelial Plasminogen Activator Inhibitor
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Serpine1, Pai1, Planh1
Expression_system: Escherichia Coli
Expression_system_strain: Sg130009
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-30
symmetry Space Group: P 1 21 1
R_factor 0.228 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.603 104.014 76.426 90.00 101.93 90.00
method X-Ray Diffractionresolution 2.02 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHigh-resolution structure of the stable plasminogen activator inhibitor type-1 variant 14-1B in its proteinase-cleaved form: A new tool for detailed interaction studies and modeling., Jensen JK, Gettins PG, Protein Sci. 2008 Aug 25. PMID:18725454
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (3cvm.pdb1.gz) 120 Kb
  • Biological Unit Coordinates (3cvm.pdb2.gz) 125 Kb
  • CSU: Contacts of Structural Units for 3CVM
  • Likely Quarternary Molecular Structure file(s) for 3CVM
  • Structure Factors (2964 Kb)
  • Retrieve 3CVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CVM from S2C, [Save to disk]
  • Re-refined 3cvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CVM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CVM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cvm_A] [3cvm_B] [3cvm]
  • SWISS-PROT database: [P05121]
  • Domain organization of [PAI1_HUMAN] by SWISSPFAM
  • Domain found in 3CVM: [SERPIN ] by SMART
    • Other resources with information on 3CVM
  • Community annotation for 3CVM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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