3CWZ	Transport Protein	date	Apr 23, 2008
title	Structure Of Rab6(Gtp)-R6ip1 Complex
authors	R.Recacha, A.Houdusse, B.Goud, A.R.Khan
compound		source
Molecule: Ras-Related Protein Rab-6a Chain: A Fragment: Unp Residues 8-195 Synonym: Rab-6 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Man Organism_taxid: 9606 Gene: Rab6a, Rab6 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Rab6-Interacting Protein 1 Chain: B Fragment: Unp Residues 707-1145 Synonym: Rab6ip1 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Rab6ip1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Phis2 Other_details: Vector Phis2 Derived From Pet15 Modified To Cleavage Site
symmetry	Space Group: P 61 2 2	R_factor 0.246 R_Free 0.302
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.240 100.240 299.250 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	GTP, MG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for recruitment of Rab6-interacting protein 1 to Golgi via a RUN domain., Recacha R, Boulet A, Jollivet F, Monier S, Houdusse A, Goud B, Khan AR, Structure. 2009 Jan 14;17(1):21-30. PMID:19141279

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (3cwz.pdb1.gz) 79 Kb LPC: Ligand-Protein Contacts for 3CWZ CSU: Contacts of Structural Units for 3CWZ Likely Quarternary Molecular Structure file(s) for 3CWZ Structure Factors (153 Kb) Retrieve 3CWZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CWZ from S2C, [Save to disk] Re-refined 3cwz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CWZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CWZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CWZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cwz_B] [3cwz] [3cwz_A] SWISS-PROT database: [Q6PAL8] [P20340] Domain organization of [DEN5A_MOUSE] [RAB6A_HUMAN] by SWISSPFAM Domains found in 3CWZ: [RAB] [RUN ] by SMART

Other resources with information on 3CWZ

Community annotation for 3CWZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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