3CXM	Hydrolase	date	Apr 24, 2008
title	Leishmania Naiffi Uracil-Dna Glycosylase In Complex With 5-B
authors	E.T.Larson, E.A.Merritt, Structural Genomics Of Pathogenic Pro Consortium (Sgpp)
compound		source
Molecule: Uracil-Dna Glycosylase Chain: A Fragment: Residues 129-373 Ec: 3.2.2.- Engineered: Yes		Organism_scientific: Leishmania Naiffi Organism_taxid: 5678 Gene: Similar To Lbrm18_v2.0540 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ava0421
symmetry	Space Group: P 61	R_factor 0.138 R_Free 0.160
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.320 75.320 105.703 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	BR, GOL, URA, URB	enzyme	Hydrolase E.C.3.2.2 BRENDA
Gene	LBRM18
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (3cxm.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 3CXM CSU: Contacts of Structural Units for 3CXM Likely Quarternary Molecular Structure file(s) for 3CXM Structure Factors (2957 Kb) Retrieve 3CXM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CXM from S2C, [Save to disk] Re-refined 3cxm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CXM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CXM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CXM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cxm] [3cxm_A] SWISS-PROT database: [A4H9F6] [D0VWU0] Domain organization of [A4H9F6_LEIBR] [D0VWU0_9TRYP] by SWISSPFAM Domains found in 3CXM: [UDG] [UreE_C ] by SMART

Other resources with information on 3CXM

Community annotation for 3CXM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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