3CYN Oxidoreductase date Apr 25, 2008
title The Structure Of Human Gpx8
authors K.L.Kavanagh, C.Johansson, W.W.Yue, G.Kochan, A.C.W.Pike, J.Murra A.K.Roos, P.Filippakopoulos, F.Von Delft, C.H.Arrowsmith, M.Wik A.M.Edwards, C.Bountra, U.Oppermann, Structural Genomics Conso (Sgc)
compound source
Molecule: Probable Glutathione Peroxidase 8
Chain: A, B, C
Fragment: Residues 44-209
Ec: 1.11.1.9
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Loc493869
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.171 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.688 120.854 75.603 90.00 119.38 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, SO4 enzyme Oxidoreductase E.C.1.11.1.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3cyn.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (3cyn.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (3cyn.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (3cyn.pdb4.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 3CYN
  • CSU: Contacts of Structural Units for 3CYN
  • Likely Quarternary Molecular Structure file(s) for 3CYN
  • Structure Factors (2562 Kb)
  • Retrieve 3CYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CYN from S2C, [Save to disk]
  • Re-refined 3cyn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CYN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CYN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cyn_A] [3cyn_C] [3cyn_B] [3cyn]
  • SWISS-PROT database: [Q8TED1]
  • Domain organization of [GPX8_HUMAN] by SWISSPFAM
    • Other resources with information on 3CYN
  • Community annotation for 3CYN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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