3CZV Lyase date Apr 30, 2008
title Crystal Structure Of The Human Carbonic Anhydrase Xiii In Co Acetazolamide
authors A.Di Fiore, G.De Simone
compound source
Molecule: Carbonic Anhydrase 13
Chain: A, B
Synonym: Carbonic Anhydrase Xiii, Carbonate Dehydratase Xii Xiii;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca13
Expression_system: Escherichia Coli
Expression_system_vector_type: Plasmid
Expression_system_vector: Bl21(De3)Plys
Expression_system_plasmid: Pgex-4t-1
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.030 81.567 112.374 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand AZM, GOL, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of human carbonic anhydrase XIII and its complex with the inhibitor acetazolamide., Di Fiore A, Monti SM, Hilvo M, Parkkila S, Romano V, Scaloni A, Pedone C, Scozzafava A, Supuran CT, De Simone G, Proteins. 2008 Jul 10. PMID:18618712
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (3czv.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (3czv.pdb2.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 3CZV
  • CSU: Contacts of Structural Units for 3CZV
  • Likely Quarternary Molecular Structure file(s) for 3CZV
  • Structure Factors (485 Kb)
  • Retrieve 3CZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CZV from S2C, [Save to disk]
  • Re-refined 3czv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CZV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CZV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3czv] [3czv_] [3czv_B] [3czv_A]
  • SWISS-PROT database: [Q8N1Q1]
  • Domain organization of [CAH13_HUMAN] by SWISSPFAM
  • Domain found in 3CZV: [Carb_anhydrase ] by SMART
  • Other resources with information on 3CZV
  • Community annotation for 3CZV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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