3D01 Structural Genomics, Unknown Function date Apr 30, 2008
title Crystal Structure Of The Protein Atu1372 With Unknown Functi Agrobacterium Tumefaciens
authors R.Zhang, X.Xu, J.Gu, A.Savchenko, A.M.Edwards, A.Joachimiak, Midwe For Structural Genomics (Mcsg)
compound source
Molecule: Uncharacterized Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Engineered: Yes
 Organism_scientific: Agrobacterium Tumefaciens Str.
Organism_taxid: 176299
Strain: C58
Atcc: 33970
Gene: Gi:17935272, Agr_c_2535, Atu1372
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdm68
symmetry Space Group: P 1
R_factor 0.179 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.623 93.600 93.628 68.20 67.87 68.14
method X-Ray Diffractionresolution 1.70 Å
ligand MSE, PG5 enzyme
Gene AGR (C. caroliniana)
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (621 Kb) [Save to disk]
  • Biological Unit Coordinates (3d01.pdb1.gz) 157 Kb
  • Biological Unit Coordinates (3d01.pdb2.gz) 156 Kb
  • Biological Unit Coordinates (3d01.pdb3.gz) 158 Kb
  • Biological Unit Coordinates (3d01.pdb4.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 3D01
  • CSU: Contacts of Structural Units for 3D01
  • Likely Quarternary Molecular Structure file(s) for 3D01
  • Structure Factors (2114 Kb)
  • Retrieve 3D01 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D01 from S2C, [Save to disk]
  • Re-refined 3d01 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3D01 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3D01
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D01, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d01_J] [3d01_C] [3d01_A] [3d01_G] [3d01_I] [3d01_D] [3d01] [3d01_B] [3d01_F] [3d01_E] [3d01_H] [3d01_L] [3d01_K]
  • SWISS-PROT database: [A9CJ63]
  • Domain organization of [A9CJ63_AGRT5] by SWISSPFAM
    • Other resources with information on 3D01
  • Community annotation for 3D01 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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