3D0E	Transferase Inhibitor	date	May 01, 2008
title	Crystal Structure Of Human Akt2 In Complex With Gsk690693
authors	N.O.Concha, A.Smallwood
compound		source
Molecule: Rac-Beta Serinethreonine-Protein Kinase Chain: A, B Fragment: Kinase Domain Synonym: Rac-Pk-Beta, Protein Kinase Akt-2, Protein Kinase Pkb Beta; Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Akt2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 32	R_factor 0.206 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.489 116.489 45.119 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	G93, TPO BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Identification of 4-(2-(4-amino-1,2,5-oxadiazol-3-yl)-1-ethyl-7-{[(3S)-3-piperidinylmethyl]o xy}-1H-imidazo[4,5-c]pyridin-4-yl)-2-methyl-3-butyn-2-ol (GSK690693), a novel inhibitor of AKT kinase., Heerding DA, Rhodes N, Leber JD, Clark TJ, Keenan RM, Lafrance LV, Li M, Safonov IG, Takata DT, Venslavsky JW, Yamashita DS, Choudhry AE, Copeland RA, Lai Z, Schaber MD, Tummino PJ, Strum SL, Wood ER, Duckett DR, Eberwein D, Knick VB, Lansing TJ, McConnell RT, Zhang S, Minthorn EA, Concha NO, Warren GL, Kumar R, J Med Chem. 2008 Sep 25;51(18):5663-79. PMID:18800763

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk] Biological Unit Coordinates (3d0e.pdb1.gz) 117 Kb Biological Unit Coordinates (3d0e.pdb2.gz) 60 Kb Biological Unit Coordinates (3d0e.pdb3.gz) 60 Kb LPC: Ligand-Protein Contacts for 3D0E CSU: Contacts of Structural Units for 3D0E Likely Quarternary Molecular Structure file(s) for 3D0E Structure Factors (1013 Kb) Retrieve 3D0E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D0E from S2C, [Save to disk] Re-refined 3d0e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D0E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D0E

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D0E, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d0e_A] [3d0e] [3d0e_B] SWISS-PROT database: [P31751] Domain organization of [AKT2_HUMAN] by SWISSPFAM Domains found in 3D0E: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 3D0E

Community annotation for 3D0E at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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