3D0N Metal Binding Protein date May 02, 2008
title Crystal Structure Of Human Carbonic Anhydrase Xiii
authors A.Di Fiore, G.De Simone
compound source
Molecule: Carbonic Anhydrase 13
Chain: A, B
Synonym: Carbonic Anhydrase Xiii, Carbonate Dehydratase Xii Xiii;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca13
Expression_system: Escherichia Coli
Expression_system_vector_type: Plasmid
Expression_system_vector: Bl21(De3)Plys
Expression_system_plasmid: Pgex-4t-1
symmetry Space Group: P 1 21 1
R_factor 0.168 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.780 58.210 72.120 90.00 92.36 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand ACT, GOL, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of human carbonic anhydrase XIII and its complex with the inhibitor acetazolamide., Di Fiore A, Monti SM, Hilvo M, Parkkila S, Romano V, Scaloni A, Pedone C, Scozzafava A, Supuran CT, De Simone G, Proteins. 2008 Jul 10. PMID:18618712
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (3d0n.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (3d0n.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 3D0N
  • CSU: Contacts of Structural Units for 3D0N
  • Likely Quarternary Molecular Structure file(s) for 3D0N
  • Structure Factors (843 Kb)
  • Retrieve 3D0N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D0N from S2C, [Save to disk]
  • Re-refined 3d0n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D0N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D0N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D0N, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d0n] [3d0n_B] [3d0n_] [3d0n_A]
  • SWISS-PROT database: [Q8N1Q1]
  • Domain organization of [CAH13_HUMAN] by SWISSPFAM
  • Domain found in 3D0N: [Carb_anhydrase ] by SMART
  • Other resources with information on 3D0N
  • Community annotation for 3D0N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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