3D11	Hydrolase	date	May 02, 2008
title	Crystal Structures Of The Nipah G Attachment Glycoprotein
authors	K.Xu, K.R.Rajashankar, Y.P.Chan, P.Himanen, C.C.Broder, D.B.Nikol
compound		source
Molecule: Hemagglutinin-Neuraminidase Chain: A Fragment: Unp Residues 176-602 Ec: 3.2.1.18 Engineered: Yes		Organism_scientific: Nipah Virus Organism_taxid: 121791 Gene: Hn Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Hi5 Expression_system_plasmid: Pacgp67
symmetry	Space Group: P 21 3	R_factor 0.228 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.161 130.161 130.161 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.31 Å
ligand	BMA, IOD, MAN, NAG	enzyme	Hydrolase E.C.3.2.1.18 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Host cell recognition by the henipaviruses: crystal structures of the Nipah G attachment glycoprotein and its complex with ephrin-B3., Xu K, Rajashankar KR, Chan YP, Himanen JP, Broder CC, Nikolov DB, Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9953-8. Epub 2008 Jul 16. PMID:18632560

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (3d11.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 3D11 CSU: Contacts of Structural Units for 3D11 Likely Quarternary Molecular Structure file(s) for 3D11 Structure Factors (402 Kb) Retrieve 3D11 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D11 from S2C, [Save to disk] Re-refined 3d11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D11 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D11

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D11, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d11] [3d11_A] SWISS-PROT database: [Q9IH62] Domain organization of [GLYCP_NIPAV] by SWISSPFAM

Other resources with information on 3D11

Community annotation for 3D11 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---