3D2L Crystal structure of SAM-dependent methyltransferase (ZP_00538691.1) from EXIGUOBACTERIUM SP. 255-15 at 1.90 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand MG, MSE enzyme
Gene EXIGDRAFT ; ZP
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (3d2l.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3d2l.pdb2.gz) 44 Kb
  • Biological Unit Coordinates (3d2l.pdb3.gz) 43 Kb
  • Biological Unit Coordinates (3d2l.pdb4.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3D2L
  • CSU: Contacts of Structural Units for 3D2L
  • Likely Quarternary Molecular Structure file(s) for 3D2L
  • Structure Factors (8893 Kb)
  • Retrieve 3D2L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D2L from S2C, [Save to disk]
  • Re-refined 3d2l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D2L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D2L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D2L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d2l] [3d2l_C] [3d2l_B] [3d2l_D] [3d2l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3D2L
  • Community annotation for 3D2L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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