3D3L	Oxidoreductase	date	May 12, 2008
title	The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of Hu Arachidonate 12-Lipoxygenase, 12s-Type
authors	L.Tresaugues, M.Moche, C.H.Arrowsmith, H.Berglund, R.D.Busam, R.C L.G.Dahlgren, A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Ham M.D.Herman, A.Johansson, I.Johansson, A.Kallas, T.Karlberg, T.Ko L.Lehtio, M.E.Nilsson, T.Nyman, K.Olesen, C.Persson, J.Sagemark, H.Schueler, L.Svensson, A.G.Thorsell, S.Van Den Berg, M.Welin, J M.Wikstrom, P.Nordlund, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Arachidonate 12-Lipoxygenase, 12s-Type Chain: A, B Fragment: Lipoxygenase Domain: Residues 172-663 Synonym: 12-Lox, Platelet-Type Lipoxygenase 12 Ec: 1.13.11.31 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Alox12, Log12 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) R3 Prare Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic-Bsa4
symmetry	Space Group: P 1	R_factor 0.206 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.590 70.153 77.868 65.37 88.01 69.82
method	X-Ray Diffraction	resolution	2.60 Å
ligand	FE	enzyme	Oxidoreductase E.C.1.13.11.31 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk] Biological Unit Coordinates (3d3l.pdb1.gz) 73 Kb Biological Unit Coordinates (3d3l.pdb2.gz) 72 Kb LPC: Ligand-Protein Contacts for 3D3L CSU: Contacts of Structural Units for 3D3L Likely Quarternary Molecular Structure file(s) for 3D3L Structure Factors (492 Kb) Retrieve 3D3L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D3L from S2C, [Save to disk] Re-refined 3d3l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D3L

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D3L, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d3l_B] [3d3l] [3d3l_A] SWISS-PROT database: [P18054] Domain organization of [LOX12_HUMAN] by SWISSPFAM

Other resources with information on 3D3L

Community annotation for 3D3L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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