3D4I Hydrolase date May 14, 2008
title Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2
authors Y.Chen, N.Carpino, N.Nassar
compound source
Molecule: Sts-2 Protein
Chain: A, B, C, D
Fragment: Pgm Domain
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ubash3a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Codonplus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Htb
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.887 115.707 121.222 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand CL enzyme
Primary referenceStructural and Functional Characterization of the 2H-Phosphatase Domain of Sts-2 Reveals an Acid-Dependent Phosphatase Activity (dagger)., Chen Y, Jakoncic J, Carpino N, Nassar N, Biochemistry. 2009 Feb 5. PMID:19196006
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (3d4i.pdb1.gz) 91 Kb
  • Biological Unit Coordinates (3d4i.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 3D4I
  • CSU: Contacts of Structural Units for 3D4I
  • Likely Quarternary Molecular Structure file(s) for 3D4I
  • Structure Factors (606 Kb)
  • Retrieve 3D4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D4I from S2C, [Save to disk]
  • Re-refined 3d4i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3D4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3D4I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D4I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d4i] [3d4i_A] [3d4i_B] [3d4i_D] [3d4i_C]
  • SWISS-PROT database: [Q3V3E1]
  • Domain organization of [Q3V3E1_MOUSE] by SWISSPFAM
    • Other resources with information on 3D4I
  • Community annotation for 3D4I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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