3D5H Protein Binding date May 16, 2008
title Crystal Structure Of Haementhin From Haemanthus Multiflorus Resolution: Formation Of A Novel Loop On A Tim Barrel Fold Functional Significance
authors S.Kumar, N.Singh, M.Sinha, S.B.Singh, A.Bhushan, P.Kaur, A.Sriniva S.Sharma, T.P.Singh
compound source
Molecule: Haementhin
Chain: A
 Organism_scientific: Scadoxus Multiflorus
Organism_taxid: 82246
symmetry Space Group: P 1 21 1
R_factor 0.152 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.803 65.400 49.435 90.00 102.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ACT, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • alpha-amylase inhibitor acti...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3d5h.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3D5H
  • CSU: Contacts of Structural Units for 3D5H
  • Likely Quarternary Molecular Structure file(s) for 3D5H
  • Structure Factors (312 Kb)
  • Retrieve 3D5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D5H from S2C, [Save to disk]
  • Re-refined 3d5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3D5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3D5H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D5H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d5h] [3d5h_A]
  • SWISS-PROT database: [B2ZGS7]
  • Domain organization of [B2ZGS7_9ASPA] by SWISSPFAM
  • Domain found in 3D5H: [Glyco_18 ] by SMART
    • Other resources with information on 3D5H
  • Community annotation for 3D5H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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