3D6Z	Transcription Regulator Dna	date	May 20, 2008
title	Crystal Structure Of R275e Mutant Of Bmrr Bound To Dna And R
authors	K.J.Newberry, R.G.Brennan
compound		source
Molecule: Bmr Promoter Dna Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Multidrug-Efflux Transporter 1 Regulator Chain: A Fragment: Residues 1-278 Engineered: Yes Mutation: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Gene: Bmrr, Bmr1r Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Top10 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbad
symmetry	Space Group: P 43 2 2	R_factor 0.226 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.500 106.500 146.140 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	GOL, RHQ	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structures of BmrR-drug complexes reveal a rigid multidrug binding pocket and transcription activation through tyrosine expulsion., Newberry KJ, Huffman JL, Miller MC, Vazquez-Laslop N, Neyfakh AA, Brennan RG, J Biol Chem. 2008 Jul 25. PMID:18658145

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (3d6z.pdb1.gz) 117 Kb LPC: Ligand-Protein Contacts for 3D6Z CSU: Contacts of Structural Units for 3D6Z Likely Quarternary Molecular Structure file(s) for 3D6Z Structure Factors (474 Kb) Retrieve 3D6Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D6Z from S2C, [Save to disk] Re-refined 3d6z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D6Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D6Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D6Z, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d6z] [3d6z_A] [3d6z_B] SWISS-PROT database: [P39075] Domain organization of [BMRR_BACSU] by SWISSPFAM Domain found in 3D6Z: [HTH_MERR ] by SMART

Other resources with information on 3D6Z

Community annotation for 3D6Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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